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Jackson Laboratory α mhc mercremer mice
α Mhc Mercremer Mice, supplied by Jackson Laboratory, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse/mercremer+mhc+mice+%CE%B1/pmc13054580-43-21-25
Average 86 stars, based on 1 article reviews
α mhc mercremer mice - by Bioz Stars, 2026-09
86/100 stars

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Knock-In:

Article Title: Gene therapy for retinal disease
Article Snippet: .. The P23H rhodopsin knock-in mouse (Jackson laboratories) was used for this and for subsequent vector testing as this represents the most biologically relevant mouse model available. ..

Plasmid Preparation:

Article Title: Gene therapy for retinal disease
Article Snippet: .. The P23H rhodopsin knock-in mouse (Jackson laboratories) was used for this and for subsequent vector testing as this represents the most biologically relevant mouse model available. ..

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Virus:

Article Title: Dual-system engineered bacteria and dendritic cells enable precise intratumoral IL-12 delivery and potent antitumor immunity.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-DnaK Abcam Cat#ab69617; RRID: AB_1209209 Mouse polyclonal anti-IL-12 p70 Proteintech Cat#30756-1-AP; RRID:AB_308641 Mouse monoclonal anti-His Proteintech Cat#66005-1; RRID:AB_11232599 Mouse monoclonal anti-alpha Tubulin Proteintech Cat#66031-1; RRID:AB_11042766 Mouse monoclonal anti-Ki67 Servicebio Cat#GB121141; RRID:AB_3083641 Rabbit monoclonal anti-CD4 Servicebio Cat#GB15064; RRID:AB_3095557 Rabbit monoclonal anti-CD8 Servicebio Cat#GB15068; RRID:AB_3246431 Rabbit polyclonal anti-E.coli O6 Bioss Cat#bs-0658R Rabbit monoclonal anti-Caspase-3 Servicebio Cat#GB12532 anti-CD45-PerCP Elabscience Cat#E-AB-F1136J anti-CD3-PE Elabscience Cat#E-AB-F1013D anti-CD4-FITC Elabscience Cat#E-AB-F1097C anti-CD8-APC Elabscience Cat# E-AB-F1104D anti-MHC II-PE Elabscience Cat# E-AB-F0990D anti-CD11c-FITC Elabscience Cat#E-AB-F0991C anti-CD86-APC Elabscience Cat#E-AB-F0994E Bacterial and virus strains pvhb-PelB-IL12A-linker-IL12B-6×His This paper N/A pT7-IL12A-linker-IL12B-6×His This paper N/A pTuLys2CMR2 Addgene Addgene #53544 pUC57-T7 Addgene Addgene #51306 pcDNA3.1(+) Egfp Addgene Addgene #129020 pET-22b Addgene Addgene #84863 Escherichia coli Nissle 1917 DSMZ DSM 6601 Chemicals, peptides, and recombinant proteins Recombinant mouse IL-2 protein NovoProtein Cat#CM39 Recombinant mouse GM-CSF protein MedChemExpress Cat#HY-P70623 Recombinant mouse TNF-α protein MedChemExpress Cat#HY-P7090 Lipopolysaccharides MedChemExpress Cat#HY-D1056 Experimental models: Cell lines Human: HEK293T ATCC CRL-11268 Human: HL60 ATCC CCL-240 Mouse: CT26 ATCC CRL-2638 Mouse: MC38 Sigma SCC172 Experimental models: Organisms/strains Mouse: C57BL/6 mouse The Jackson Laboratory JAX: 000664 Mouse: BALB/c mouse The Jackson Laboratory JAX: 000651 Mouse: OT-1 mouse (C57BL/6-Tg(TcraTcrb)1100Mjb/J) The Michael J. Bevan Laboratory JAX: 003831 Recombinant DNA pvhb-PelB-IL12A-linker-IL12B-6×His This paper N/A pT7-IL12A-linker-IL12B-6×His This paper N/A pTuLys2CMR2 Addgene Addgene #53544 pUC57-T7 Addgene Addgene #51306 pcDNA3.1(+) Egfp Addgene Addgene #129020 (Continued on next page) e1 Cell Reports Medicine 7, 102801, June 16, 2026 Article ll OPEN ACCESS ..

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..

Recombinant:

Article Title: Dual-system engineered bacteria and dendritic cells enable precise intratumoral IL-12 delivery and potent antitumor immunity.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-DnaK Abcam Cat#ab69617; RRID: AB_1209209 Mouse polyclonal anti-IL-12 p70 Proteintech Cat#30756-1-AP; RRID:AB_308641 Mouse monoclonal anti-His Proteintech Cat#66005-1; RRID:AB_11232599 Mouse monoclonal anti-alpha Tubulin Proteintech Cat#66031-1; RRID:AB_11042766 Mouse monoclonal anti-Ki67 Servicebio Cat#GB121141; RRID:AB_3083641 Rabbit monoclonal anti-CD4 Servicebio Cat#GB15064; RRID:AB_3095557 Rabbit monoclonal anti-CD8 Servicebio Cat#GB15068; RRID:AB_3246431 Rabbit polyclonal anti-E.coli O6 Bioss Cat#bs-0658R Rabbit monoclonal anti-Caspase-3 Servicebio Cat#GB12532 anti-CD45-PerCP Elabscience Cat#E-AB-F1136J anti-CD3-PE Elabscience Cat#E-AB-F1013D anti-CD4-FITC Elabscience Cat#E-AB-F1097C anti-CD8-APC Elabscience Cat# E-AB-F1104D anti-MHC II-PE Elabscience Cat# E-AB-F0990D anti-CD11c-FITC Elabscience Cat#E-AB-F0991C anti-CD86-APC Elabscience Cat#E-AB-F0994E Bacterial and virus strains pvhb-PelB-IL12A-linker-IL12B-6×His This paper N/A pT7-IL12A-linker-IL12B-6×His This paper N/A pTuLys2CMR2 Addgene Addgene #53544 pUC57-T7 Addgene Addgene #51306 pcDNA3.1(+) Egfp Addgene Addgene #129020 pET-22b Addgene Addgene #84863 Escherichia coli Nissle 1917 DSMZ DSM 6601 Chemicals, peptides, and recombinant proteins Recombinant mouse IL-2 protein NovoProtein Cat#CM39 Recombinant mouse GM-CSF protein MedChemExpress Cat#HY-P70623 Recombinant mouse TNF-α protein MedChemExpress Cat#HY-P7090 Lipopolysaccharides MedChemExpress Cat#HY-D1056 Experimental models: Cell lines Human: HEK293T ATCC CRL-11268 Human: HL60 ATCC CCL-240 Mouse: CT26 ATCC CRL-2638 Mouse: MC38 Sigma SCC172 Experimental models: Organisms/strains Mouse: C57BL/6 mouse The Jackson Laboratory JAX: 000664 Mouse: BALB/c mouse The Jackson Laboratory JAX: 000651 Mouse: OT-1 mouse (C57BL/6-Tg(TcraTcrb)1100Mjb/J) The Michael J. Bevan Laboratory JAX: 003831 Recombinant DNA pvhb-PelB-IL12A-linker-IL12B-6×His This paper N/A pT7-IL12A-linker-IL12B-6×His This paper N/A pTuLys2CMR2 Addgene Addgene #53544 pUC57-T7 Addgene Addgene #51306 pcDNA3.1(+) Egfp Addgene Addgene #129020 (Continued on next page) e1 Cell Reports Medicine 7, 102801, June 16, 2026 Article ll OPEN ACCESS ..

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..

other:

Article Title: A tumor-intrinsic WNT-inhibitory NOTUM program drives immune resistance in microsatellite stable colorectal cancer
Article Snippet: Mouse: C57BL/6-Tg(TcraTcrb)1100Mjb/J , The Jackson Laboratory , #:003831.

RNAscope:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..

Multiplex Assay:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..

Imaging:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Real-time Polymerase Chain Reaction:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Bicinchoninic Acid Protein Assay:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..

Enzyme-linked Immunosorbent Assay:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

RNA Sequencing:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

FACS:

Article Title: Epigenetic control of microglial mitochondrial immunity by KAT7 drives Alzheimer's disease pathogenesis.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-KAT7 Cell Signaling Technology Cat #58418; RRID: AB_2799547 Rabbit anti-JADE2 Proteintech Cat #11513-1-AP; RRID: AB_2877772 Rabbit anti-iNOS GeneTex Cat #GTX130246; RRID: AB_2886221 Rabbit anti-p65 Cell Signaling Technology Cat #8242; RRID: AB_10859369 Rabbit anti-p-p65 (Ser536) Thermo Fisher Scientific Cat #MA5-15160; RRID: AB_10983078 Rabbit anti-TBK1 Cell Signaling Technology Cat #3504; RRID: AB_2255663 Rabbit anti-p-TBK1 (Ser172) Cell Signaling Technology Cat #5483; RRID: AB_10693472 Rabbit anti-p-IRF3 (Ser396) Cell Signaling Technology Cat #4947; RRID: AB_823547 Rabbit anti-Iba1 Wako Cat #019-19741; RRID: AB_839504 Goat anti-Iba1 Novus Biologicals Cat #NB100-1028; RRID: AB_3148646 Rabbit anti-CMPK2 Novus Biologicals Cat #NBP1-80653; RRID: AB_11037163 Rabbit anti-H3K14ac Cell Signaling Technology Cat #7627; RRID: AB_10839410 Rabbit anti-H3K14ac Millipore Cat #07-353; RRID: AB_310545 Rabbit anti-H3K23ac Millipore Cat #07-355; RRID: AB_310546 Rabbit anti-H3K4me3 Cell Signaling Technology Cat #9751; RRID: AB_2616028 Rabbit anti-H3 Proteintech Cat #17168-1-AP; RRID: AB_2716755 Rabbit anti-IgG Cell Signaling Technology Cat #66362; RRID: AB_2924329 Mouse anti-GAPDH Proteintech Cat #60004-1-Ig; RRID: AB_2107436 Mouse anti-β-actin Proteintech Cat #66009-1-Ig; RRID: AB_2782959 Mouse anti-Aβ Biolegend Cat #803004; RRID: AB_2715854 Mouse anti-GFAP Thermo Fisher Scientific Cat #14-9892-82; RRID: AB_10598206 Mouse anti-NeuN Millipore Cat #MAB377; RRID: AB_2298772 HRP linked Donkey anti-Rabbit IgG Cytiva Cat #NA934; RRID: AB_772206 HRP linked Sheep anti-Mouse IgG Cytiva Cat #NA931; RRID: AB_772210 Alexa Fluor 488 Donkey anti-Mouse IgG Jackson ImmunoResearch Cat #715-545-150; RRID: AB_2340846 Rhodamine Donkey anti-Rabbit IgG Jackson ImmunoResearch Cat #711-025-152; RRID: AB_2340588 Alexa Fluor 647 Donkey anti-Goat IgG Jackson ImmunoResearch Cat #705-605-147; RRID: AB_2340437 Biological samples Mouse brain tissue This paper N/A Human brain samples Johns Hopkins Brain Resource Center, see Table S1 for details N/A Chemicals, peptides, and recombinant proteins Thioflavin S Sigma-Aldrich Cat #T1892 Beta-Amyloid (1-42), HFIP rPeptide Cat #A-1163 Tamoxifen Selleck Cat #S1238 WM-3835 Selleck Cat #S9805 LPS Sigma-Aldrich Cat #L2630 Collagenase Type IV Sigma-Aldrich Cat #C4-BIOC DNase I Sigma-Aldrich Cat #DN25 Picrotoxin Sigma-Aldrich Cat #P1675 TTX Tocris Cat #1069 FBS Avantor Cat #97068-085 Percoll Cytiva Cat #17089101 (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–16.e1–e8, November 11, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Matrigel Corning Cat #354230 Y-27632 StemCell Technologies Cat #72304 Doxycycline Sigma-Aldrich Cat #D9891 Critical commercial assays RNAscope Multiplex Fluorescent Reagent Kit v.2 Advanced Cell Diagnostics Cat #323100 TSA Plus Fluorescein Evaluation Kit PerkinElmer Cat #NEL741 Click-iT EdU Alexa Fluor 488 Imaging Kit Invitrogen Cat #C10337 HiScript III RT SuperMix for qPCR Kit Vazyme Cat #R323-01 Pierce BCA Protein Assay Kit Thermo Cat #23227 ZymoPURE II Plasmid Midiprep kit Zymo Research Cat #D4201 Mouse IL-6 ELISA Kits BioLegend Cat #431301 Mouse IL-1β ELISA Kits BioLegend Cat #432601 Human IL-6 ELISA Kits BioLegend Cat #430501 CUT&Tag Assay Kit Vazyme Cat #TD904 TruePrep Index Kit V2 for Illumina Vazyme Cat #TD202 CD11b MicroBeads Miltenyi Biotec Cat #130-093-634 Osmotic pumps RWD Cat #1004W Brain infusion kit RWD Cat #Bic-3 Deposited data RNA-seq data from BV2 cells This paper GEO: GSE327604 CUT&Tag data from BV2 cells This paper GEO: GSE327608 scRNA-seq data from FACS-puried microglia This paper GEO: GSE327611 Experimental models: Cell lines HEK293T ATCC CRL-3216; RRID: CVCL_0063 BV2 A gift from Tony Wyss-Coray58 N/A Human CLYBL 6-TF-iMG iPSC Jackson Laboratory Cat #JIPSC002072 Experimental models: Organisms/strains Mouse: Kat7f/f This paper N/A Mouse: C57BL/6J Jackson Laboratory JAX: 000664; RRID: IMSR_JAX:000664 Mouse: 5xFAD mice Jackson Laboratory JAX: 034848; RRID:MMRRC_034848-JAX Mouse: Cx3cr1-CreER Jackson Laboratory JAX: 021160; RRID: IMSR_JAX:021160 Mouse: Camk2a-Cre Jackson Laboratory JAX: 005359; RRID: IMSR_JAX:005359 Oligonucleotides Primers for mouse genotyping, see Table S2 This paper N/A Primers for qPCR, see Table S3 This paper N/A Primers for mtDNA qPCR, see Table S4 This paper N/A Primers for qChIP, see Table S5 This paper N/A Recombinant DNA pLentiCRISPR-v2-Puro vector Sanjana et al.59 RRID: Addgene_52961 pLentiCRISPR-Kat7-sgRNA This paper N/A pLenti-EF1a-P2A-Puro vector Origene Cat #PS100142 pLenti-EF1a-KAT7 This paper N/A pLenti-EF1a-KAT7 (E508Q) This paper N/A pLenti-EF1a-JADE2 This paper N/A pLenti-EF1a-CMPK2 This paper N/A (Continued on next page) ll OPEN ACCESS Article e2 Neuron 114, 1–16.e1–e8, November 11, 2026 .. Formalin-fixed paraffin-embedded (FFPE) human postmortem brain samples from AD patients and controls (aged-matched and died of certain cause unrelated to dementia) were obtained from Johns Hopkins Brain Resource Center.

Expressing:

Article Title: Para-uterine imaging protocol: Stabilizing living mouse embryos within the maternal abdomen for in vivo imaging and visually guided physiology
Article Snippet: .. Mouse (Pregnant Female: Adult) (9.5 days – 18.5 days post conception) , Multiple Sources (e.g., Jackson Labs) , Multiple Genotypes (expressing a fluorescent indicator). ..

RNA sequencing:

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..

Gene Expression:

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..

Software:

Article Title: Translatome profiling reveals opposing alterations in inhibitory and excitatory neurons of fragile X mice and identifies EPAC2 as a therapeutic target.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies mouse anti-parvalbumin Sigma-Aldrich Cat# SAB4200545; RRID: AB_2857970 Chicken Anti-GFP Thermo Fischer Scientific Cat# 600-901-215; RRID: AB_1537402 Rabbit Anti-EPAC2 Cell signaling Cat#43239; RRID: AB_2799239 Mouse Anti-NEUN Thermofisher Cat#MA5-33103; RRID: AB_2802653 Mouse Anti-HA Biolegend Covance Cat# MMS-101P-200; RRID: AB_10064068 Mouse Anti-GAD6 DSHB DSHB Cat# GAD-6; RRID: AB_528264 Mouse Anti-Vglut1 DSHB DSHB Cat# N28/9; RRID: AB_2877383 Mouse Anti-PSD-95 Antibodies Incorporated Cat# 75-028; RRID: AB_2292909 Mouse Anti-Syt2 Abcam Cat# ab154035; RRID: AB_2916272 Mouse Anti-gamma-Tubulin Sigma-Aldrich Cat# T5326; RRID: AB_532292 Bacterial and virus strains pGP-AAV-syn-jGCaMP8s-WPRE Zhang et al.85 Addgene #162374 Chemicals, peptides, and recombinant proteins ESI-05 Tocris Cat no. 6320/25 Critical commercial assays Zymo Research Direct-zol RNA Miniprep kit Zymo Research Cat #R2053 Zymo Research Direct-zol RNA Microprep kit Zymo Research Cat #R2063 Ovation RNA-Seq System V2 Tecan Cat #400984 RNAscope Multiplex Fluorescent Reagent Kit v2 ACD biotechne Cat #323100 BCA protein assay Thermofisher Cat #23227 Rap1 Pull-Down and Detection Kit Thermofisher Cat #16120 Deposited data Ribotag Excitatory PV translatomes NCBI Gene Expression Omnibus GEO: GSE325852 Experimental models: Organisms/strains Mouse: C57BL/6J (WT) Jackson Laboratories Cat #000664 Mouse: B6.129P2-Fmr1tm1Cgr/J (C57BL/6J-Fmr1-/-) Jackson Laboratories Cat #003025 Mouse: B6;129P2-Pvalbtm1(cre)Arbr/J (PV-Cre) Jackson Laboratories Cat #008069 Mouse: B6.Cg-Tg(Camk2a-cre)T29-1Stl/J Jackson Laboratories Cat#005359 Mouse: B6N.129-Rpl22tm1.1Psam/J Jackson Laboratories Cat#011029 Mouse: Rapgef4 KO mice Anis Contractor lab N/A Software and algorithms Matlab 2023 MathWorks https://www.mathworks.com/ ImageJ/FIJI NIH https://imagej.nih.gov/ij/ GraphPad Prism GraphPad Software https://www.graphpad.com/features ThorImageLS 4i Thorlabs https://www.thorlabs.com/ Python 3.10.9 Python Software Foundation https://www.python.org/ R 4.4.2 R package https://www.npackd.org/p/r/4.4.2 Suite2P Janelia Research Campus https://github.com/MouseLand/suite2p Cellpose2.0 Syeda et al.76 https://github.com/MouseLand/cellpose Limma-voom Law et al.34 and Ritchie et al.35 https://bioconductor.org/packages/release/bioc/ html/limma.html Bioconductor clusterProfiler 4.0 Yu et al.86 https://bioconductor.org/packages/release/bioc/ html/clusterProfiler.html (Continued on next page) ll OPEN ACCESSArticle Neuron 114, 1–18.e1–e9, September 16, 2026 e1 ..



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Image Search Results


USP18 expression is induced by cardiac I/R injury. a Gene Ontology (GO) enrichment analysis of the RNA-seq data in I/R and control hearts at 24 h postsurgery ( n =3). b Heatmap displaying differentially expressed ubiquitination-associated genes in I/R and control hearts at 24 h postsurgery ( n =3). c Protein levels of USP18 in donor heart tissue and patients with ischemic heart disease (IHD) ( n =4). d Immunofluorescence staining of USP18 and α-actin in donor heart tissue and patients with IHD ( n =3). Scale bar=35 μm (left) and 50 μm (right). e Protein levels of USP18 in heart tissue post-IR ( n =4). f Immunofluorescence staining of USP18 and WGA in heart tissue 24 h after I/R injury ( n =5). Scale bar=50 μm. g Protein expression of USP18 in primary neonatal rat cardiomyocytes (NRVMs) after H/R challenge ( n =4). h Immunofluorescence staining of USP18 in cardiomyocytes after H/R challenge. Scale bar=50 μm. ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; WGA. Wheat germ agglutinin; DAPI. 4′,6-diamidino-2-phenylindole; H/R. Hypoxia/reoxygenation; RNA-seq. RNA sequencing; MAPK. Mitogen-activated protein kinase; GABA. γ-aminobutyric acid.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: USP18 expression is induced by cardiac I/R injury. a Gene Ontology (GO) enrichment analysis of the RNA-seq data in I/R and control hearts at 24 h postsurgery ( n =3). b Heatmap displaying differentially expressed ubiquitination-associated genes in I/R and control hearts at 24 h postsurgery ( n =3). c Protein levels of USP18 in donor heart tissue and patients with ischemic heart disease (IHD) ( n =4). d Immunofluorescence staining of USP18 and α-actin in donor heart tissue and patients with IHD ( n =3). Scale bar=35 μm (left) and 50 μm (right). e Protein levels of USP18 in heart tissue post-IR ( n =4). f Immunofluorescence staining of USP18 and WGA in heart tissue 24 h after I/R injury ( n =5). Scale bar=50 μm. g Protein expression of USP18 in primary neonatal rat cardiomyocytes (NRVMs) after H/R challenge ( n =4). h Immunofluorescence staining of USP18 in cardiomyocytes after H/R challenge. Scale bar=50 μm. ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; WGA. Wheat germ agglutinin; DAPI. 4′,6-diamidino-2-phenylindole; H/R. Hypoxia/reoxygenation; RNA-seq. RNA sequencing; MAPK. Mitogen-activated protein kinase; GABA. γ-aminobutyric acid.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: Expressing, RNA Sequencing, Control, Ubiquitin Proteomics, Immunofluorescence, Staining

USP18 deficiency mitigates mitochondrial dysfunction, acute cardiac I/R injury, and cardiac remodeling in vivo. a 2,3,5-triphenyltetrazolium chloride (TTC) staining of heart tissue 24 h post-I/R in WT and I/R groups ( n= 5). Scale bar=0.5 cm. ⁎⁎⁎ P <0.001. b Mitochondrial DNA ( n =6) and mitochondrial complexes I and II–III activity ( n =5) 24 h post-I/R in each group. ⁎⁎ P <0.01, ⁎⁎⁎⁎ P <0.0001. c Representative electron micros c opy images of heart sections 24 h post-I/R; quantitative analysis of the mitochondrial volume density and percent of mitochondria with cristae loss in each group ( n= 5). Scale bar=10 μm (top) and 6 μm (bottom). Red arrows indicate mitochondria with cristae loss ⁎⁎⁎ P <0.001. d Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in mitochondria in the indicated groups ( n= 4). ⁎⁎ P <0.01, ⁎⁎⁎⁎ P <0.0001, ns non-significant. e H&E staining, PSR staining, and quantitative statistical analysis of cell size and left ventricle (LV) fibrotic area in WT mice and USP18-cKO mice at 4 weeks after I/R injury ( n= 5). Scale bar=1 mm (left), 50 μm (middle), and 100 μm (right). ⁎⁎ P <0.01. f Representative B-mode and M-mode echocardiographic images of LV from WT mice or USP18-cKO mice 4 weeks after I/R injury. g Cardiac function of WT mice and USP18-cKO mice after I/R injury at the indicated time points ( n= 6). ⁎ P <0.05, ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001 vs . WT, ns non-significant. USP18 . Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; WT. Wild-type; ATP. Adenosine triphosphate; H&E. Hematoxylin and eosin; PSR. Picrosirius red; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; USP18-cKO. Ubiquitin-specific protease 18 conditional knockout; LVIDd. Left ventricle internal diameter at diastole; LVISd. Left ventricle internal diameter at systole; LVEF. Left ventricle ejection fraction; LVFS. Left ventricle fractional shortening.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: USP18 deficiency mitigates mitochondrial dysfunction, acute cardiac I/R injury, and cardiac remodeling in vivo. a 2,3,5-triphenyltetrazolium chloride (TTC) staining of heart tissue 24 h post-I/R in WT and I/R groups ( n= 5). Scale bar=0.5 cm. ⁎⁎⁎ P <0.001. b Mitochondrial DNA ( n =6) and mitochondrial complexes I and II–III activity ( n =5) 24 h post-I/R in each group. ⁎⁎ P <0.01, ⁎⁎⁎⁎ P <0.0001. c Representative electron micros c opy images of heart sections 24 h post-I/R; quantitative analysis of the mitochondrial volume density and percent of mitochondria with cristae loss in each group ( n= 5). Scale bar=10 μm (top) and 6 μm (bottom). Red arrows indicate mitochondria with cristae loss ⁎⁎⁎ P <0.001. d Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in mitochondria in the indicated groups ( n= 4). ⁎⁎ P <0.01, ⁎⁎⁎⁎ P <0.0001, ns non-significant. e H&E staining, PSR staining, and quantitative statistical analysis of cell size and left ventricle (LV) fibrotic area in WT mice and USP18-cKO mice at 4 weeks after I/R injury ( n= 5). Scale bar=1 mm (left), 50 μm (middle), and 100 μm (right). ⁎⁎ P <0.01. f Representative B-mode and M-mode echocardiographic images of LV from WT mice or USP18-cKO mice 4 weeks after I/R injury. g Cardiac function of WT mice and USP18-cKO mice after I/R injury at the indicated time points ( n= 6). ⁎ P <0.05, ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001 vs . WT, ns non-significant. USP18 . Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; WT. Wild-type; ATP. Adenosine triphosphate; H&E. Hematoxylin and eosin; PSR. Picrosirius red; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; USP18-cKO. Ubiquitin-specific protease 18 conditional knockout; LVIDd. Left ventricle internal diameter at diastole; LVISd. Left ventricle internal diameter at systole; LVEF. Left ventricle ejection fraction; LVFS. Left ventricle fractional shortening.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: In Vivo, Staining, Activity Assay, Ubiquitin Proteomics, Knock-Out

Overexpression of USP18 in the heart exacerbates mitochondrial dysfunction, acute cardiac injury, and cardiac remodeling following I/R in mice. a TTC staining of heart tissue 24 h post-I/R in each group ( n= 5). Scale bar=0.5 cm. ⁎⁎⁎ P <0.001. b Mitochondrial DNA levels ( n= 6) and mitochondrial complexes I and II–III activity ( n= 5) 24 h post-I/R in each group. ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. c Representative electron microscopy images of heart sections 24 h post-I/R. Quantitative analysis of mitochondrial volume density and the percent of mitochondria with cristae loss in each group ( n= 5). Scale bar=10 μm (top) and 6 μm (bottom). Red arrows indicate mitochondria with cristae loss. ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. d Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in mitochondria in the indicated groups ( n= 4). ⁎ P <0.05, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. e H&E staining, PSR staining, and quantitative statistical analysis of cell size and left ventricl e (LV) fibrotic area in AAV9-USP18-transfected mice at 4 weeks after I/R injury ( n= 5). Scale bar=1 mm (left), 50 μm (middle), and 100 μm (right). ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. f Representative B-mode and M-mode echocardiographic images of LV from AAV9-USP18-transfected mice 4 weeks after I/R injury. g Cardiac function of AAV9-USP18-transfected mice after I/R injury at the indicated time points ( n= 6). ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001 vs . AAV9-NC, ns non-significant. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; NC. Negative control; AAV9. Adeno-associated virus serotype 9; AAV9-USP18. Adeno-associated virus serotype 9 encoding USP18; TTC. 2,3,5-triphenyltetrazolium chloride; ATP. Adenosine triphosphate; H&E. Hematoxylin and eosin; PSR. picrosirius red; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; LVIDd. Left ventricle internal diameter at diastole; LVISd. Left ventricle internal diameter at systole; LVEF. Left ventricle ejection fraction; LVFS. Left ventricle fractional shortening.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: Overexpression of USP18 in the heart exacerbates mitochondrial dysfunction, acute cardiac injury, and cardiac remodeling following I/R in mice. a TTC staining of heart tissue 24 h post-I/R in each group ( n= 5). Scale bar=0.5 cm. ⁎⁎⁎ P <0.001. b Mitochondrial DNA levels ( n= 6) and mitochondrial complexes I and II–III activity ( n= 5) 24 h post-I/R in each group. ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. c Representative electron microscopy images of heart sections 24 h post-I/R. Quantitative analysis of mitochondrial volume density and the percent of mitochondria with cristae loss in each group ( n= 5). Scale bar=10 μm (top) and 6 μm (bottom). Red arrows indicate mitochondria with cristae loss. ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. d Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in mitochondria in the indicated groups ( n= 4). ⁎ P <0.05, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. e H&E staining, PSR staining, and quantitative statistical analysis of cell size and left ventricl e (LV) fibrotic area in AAV9-USP18-transfected mice at 4 weeks after I/R injury ( n= 5). Scale bar=1 mm (left), 50 μm (middle), and 100 μm (right). ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. f Representative B-mode and M-mode echocardiographic images of LV from AAV9-USP18-transfected mice 4 weeks after I/R injury. g Cardiac function of AAV9-USP18-transfected mice after I/R injury at the indicated time points ( n= 6). ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001 vs . AAV9-NC, ns non-significant. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; NC. Negative control; AAV9. Adeno-associated virus serotype 9; AAV9-USP18. Adeno-associated virus serotype 9 encoding USP18; TTC. 2,3,5-triphenyltetrazolium chloride; ATP. Adenosine triphosphate; H&E. Hematoxylin and eosin; PSR. picrosirius red; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; LVIDd. Left ventricle internal diameter at diastole; LVISd. Left ventricle internal diameter at systole; LVEF. Left ventricle ejection fraction; LVFS. Left ventricle fractional shortening.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: Over Expression, Staining, Activity Assay, Electron Microscopy, Transfection, Ubiquitin Proteomics, Negative Control, Virus

Effects of USP18 on H/R-induced injury to NRVMs. a-d NRVMs were transfected with USP18 siRNA and exposed to H/R. Scale bar=26 μm (top) and 50 μm (bottom). Representative confocal microscopy images showing mitochondrial morphology probed with MitoTracker Red ( n= 6) and quantification of mitochondrial length, mitochondrial fragmentation, and mitochondrial DNA levels ( n= 6) ( a and b ). Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in NRVMs in the indicated groups ( n= 4) ( c and d ). e-h NRVMs were infected with Ad-USP18 and exposed to H/R. Scale bar=26 μm (top) and 50 μm (bottom). Representative confocal microscopy images showing mitochondrial morphology probed with MitoTracker Red ( n= 6) and quantification of mitochondrial length, mitochondrial fragmentation, and mitochondrial DNA levels ( n= 6) ( e and f ). Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in NRVMs in the indicated groups ( n= 4) ( g and h ). ⁎ P <0.05, ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001, ns non-significant. US P 18. Ubiquitin-specific protease 18; H/R. Hypoxia/reoxygenation; NC. Negative control; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; NRVMs. Neonatal rat ventricular cardiomyocytes; ATP. Adenosine triphosphate; OCR. Oxygen consumption rate.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: Effects of USP18 on H/R-induced injury to NRVMs. a-d NRVMs were transfected with USP18 siRNA and exposed to H/R. Scale bar=26 μm (top) and 50 μm (bottom). Representative confocal microscopy images showing mitochondrial morphology probed with MitoTracker Red ( n= 6) and quantification of mitochondrial length, mitochondrial fragmentation, and mitochondrial DNA levels ( n= 6) ( a and b ). Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in NRVMs in the indicated groups ( n= 4) ( c and d ). e-h NRVMs were infected with Ad-USP18 and exposed to H/R. Scale bar=26 μm (top) and 50 μm (bottom). Representative confocal microscopy images showing mitochondrial morphology probed with MitoTracker Red ( n= 6) and quantification of mitochondrial length, mitochondrial fragmentation, and mitochondrial DNA levels ( n= 6) ( e and f ). Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in NRVMs in the indicated groups ( n= 4) ( g and h ). ⁎ P <0.05, ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001, ns non-significant. US P 18. Ubiquitin-specific protease 18; H/R. Hypoxia/reoxygenation; NC. Negative control; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; NRVMs. Neonatal rat ventricular cardiomyocytes; ATP. Adenosine triphosphate; OCR. Oxygen consumption rate.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: Transfection, Confocal Microscopy, Infection, Ubiquitin Proteomics, Negative Control

USP18 aggravates cardiac I/R injury through regulation of mitochondria and inhibition of mitophagy. a Electron microscopy image showing mitophagy in USP18-cKO mouse hearts ( n= 5). Scale bar=3 μm. White arrowheads indicate sites of mitophagy. b Protein levels of PINK1, Parkin, ubiquitinated proteins (Ub), P62, and LC3II in mitochondria from heart tissue in USP18-cKO and WT mice 24 h after I/R injury ( n =4). c Electron microscopy image showing mitophagy in USP18-overexpres (OV) mouse hearts ( n =5). Scale bar=3 μm. White arrowheads indicate sites of mitophagy. d Protein levels of PINK1, Parkin, Ub, P62, and LC3II proteins in mitochondria from the heart tissue of USP18-OV mice 24 h after I/R injury ( n =4). Color shift in mitophagy dye (red) and lysosomal dye (green) in NRVMs showing mitophagy in NRVMs with USP18 siRNA transfection ( e ) or Ad-USP18 infection ( f ) and the quantitative mitophagy index in each group ( n= 5). Scale bar=9 μm. Protein levels of PINK1, Parkin, Ub, P62, and LC3II in mitochondria from NRVMs transfected with USP18 siRNA ( g ) or infected with Ad-USP18 ( h ). ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001 ⁎⁎⁎⁎ P <0.0001. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; WT. Wild-type; KO. Knockout; P62. Sequestosome 1; LC3. Microtubule-associated protein 1 light chain 3; VDAC. Voltage-dependent anion channel.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: USP18 aggravates cardiac I/R injury through regulation of mitochondria and inhibition of mitophagy. a Electron microscopy image showing mitophagy in USP18-cKO mouse hearts ( n= 5). Scale bar=3 μm. White arrowheads indicate sites of mitophagy. b Protein levels of PINK1, Parkin, ubiquitinated proteins (Ub), P62, and LC3II in mitochondria from heart tissue in USP18-cKO and WT mice 24 h after I/R injury ( n =4). c Electron microscopy image showing mitophagy in USP18-overexpres (OV) mouse hearts ( n =5). Scale bar=3 μm. White arrowheads indicate sites of mitophagy. d Protein levels of PINK1, Parkin, Ub, P62, and LC3II proteins in mitochondria from the heart tissue of USP18-OV mice 24 h after I/R injury ( n =4). Color shift in mitophagy dye (red) and lysosomal dye (green) in NRVMs showing mitophagy in NRVMs with USP18 siRNA transfection ( e ) or Ad-USP18 infection ( f ) and the quantitative mitophagy index in each group ( n= 5). Scale bar=9 μm. Protein levels of PINK1, Parkin, Ub, P62, and LC3II in mitochondria from NRVMs transfected with USP18 siRNA ( g ) or infected with Ad-USP18 ( h ). ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001 ⁎⁎⁎⁎ P <0.0001. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; WT. Wild-type; KO. Knockout; P62. Sequestosome 1; LC3. Microtubule-associated protein 1 light chain 3; VDAC. Voltage-dependent anion channel.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: Inhibition, Electron Microscopy, Transfection, Infection, Ubiquitin Proteomics, Knock-Out

Parkin knockdown counteracts the protection of USP18 deficiency in vivo. USP18-cKO mice were infected with AAV9-shParkin and subjected to I/R surgery. a Parkin protein levels in mouse hearts infected with AAV9-shParkin ( n= 4). b TTC staining of heart tissue 24 h post-I/R in each group ( n= 5). Scale bar=0.5 cm. c Serum levels of cTnI, CK-MB, and LDH in AAV9-shParkin-infected mice 4 h after I/R surgery ( n= 5). d DNA fragmentation and cleaved caspase-3 activity in heart tissue from AAV9-shParkin-infected mice 24 h after I/R injury ( n= 6). e Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in mitochondria in the indicated groups ( n= 4). f Mitochondrial DNA ( n= 6) and complexes I and II–III activity ( n= 5) 24 h post-I/R in each group. g Representative electron microscopy images of heart sections 24 h post-I/R. The mitochondrial volume density and percent of mitochondria with cristae loss were measured in each group ( n= 5). Scale bar=10 μm (top) and 6 μm (bottom). h Protein levels of P62, ubiquitinated proteins (Ub), and LC3II in mitochondria from heart tissue 24 h after I/R injury ( n= 4). i H&E staining and quantitative statistical analysis of cell size ( n= 5) in USP18-cKO mice and AAV9-shParkin-infected mice 4 weeks after I/R injury. Scale bar=1 μm (top) and 50 μm (bottom). j Heart weight-to-tibia length ratio (HW/TL) ( n= 6) in each group. k Representative B-mode and M-mode echocardiographic images of the left ventricle from USP18-cKO mice and AAV9-shParkin-infected mice 4 weeks after I/R injury. l Cardiac function of USP18-cKO mice and AAV9-shParkin-infected mice 4 weeks after I/R injury ( n= 6). ⁎ P <0.05, ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; cTnI. Cardiac Troponin I; CK-MB. Creatine kinase-MB isoenzyme; LDH. Lactate dehydrogenase; NC. Negative control; AAV9. Adeno-associated virus serotype 9; AAV9-USP18. Adeno-associated virus serotype 9 encoding USP18; TTC. 2,3,5-triphenyltetrazolium chloride; ATP. Adenosine triphosphate; H&E. Hematoxylin and eosin; PSR. Picrosirius red; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; LVIDd. Left ventricle internal diameter at diastole; LVISd. Left ventricle internal diameter at systole; LVEF. Left ventricle ejection fraction; LVFS. Left ventricle fractional shortening; HR. Heart rate.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: Parkin knockdown counteracts the protection of USP18 deficiency in vivo. USP18-cKO mice were infected with AAV9-shParkin and subjected to I/R surgery. a Parkin protein levels in mouse hearts infected with AAV9-shParkin ( n= 4). b TTC staining of heart tissue 24 h post-I/R in each group ( n= 5). Scale bar=0.5 cm. c Serum levels of cTnI, CK-MB, and LDH in AAV9-shParkin-infected mice 4 h after I/R surgery ( n= 5). d DNA fragmentation and cleaved caspase-3 activity in heart tissue from AAV9-shParkin-infected mice 24 h after I/R injury ( n= 6). e Oxygen consumption rate (OCR) and quantitative statistical analysis of basal respiration, ATP-related respiration, maximal respiration, and spare respiratory capacity in mitochondria in the indicated groups ( n= 4). f Mitochondrial DNA ( n= 6) and complexes I and II–III activity ( n= 5) 24 h post-I/R in each group. g Representative electron microscopy images of heart sections 24 h post-I/R. The mitochondrial volume density and percent of mitochondria with cristae loss were measured in each group ( n= 5). Scale bar=10 μm (top) and 6 μm (bottom). h Protein levels of P62, ubiquitinated proteins (Ub), and LC3II in mitochondria from heart tissue 24 h after I/R injury ( n= 4). i H&E staining and quantitative statistical analysis of cell size ( n= 5) in USP18-cKO mice and AAV9-shParkin-infected mice 4 weeks after I/R injury. Scale bar=1 μm (top) and 50 μm (bottom). j Heart weight-to-tibia length ratio (HW/TL) ( n= 6) in each group. k Representative B-mode and M-mode echocardiographic images of the left ventricle from USP18-cKO mice and AAV9-shParkin-infected mice 4 weeks after I/R injury. l Cardiac function of USP18-cKO mice and AAV9-shParkin-infected mice 4 weeks after I/R injury ( n= 6). ⁎ P <0.05, ⁎⁎ P <0.01, ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; cTnI. Cardiac Troponin I; CK-MB. Creatine kinase-MB isoenzyme; LDH. Lactate dehydrogenase; NC. Negative control; AAV9. Adeno-associated virus serotype 9; AAV9-USP18. Adeno-associated virus serotype 9 encoding USP18; TTC. 2,3,5-triphenyltetrazolium chloride; ATP. Adenosine triphosphate; H&E. Hematoxylin and eosin; PSR. Picrosirius red; FCCP. Carbonyl cyanide p-trifluoromethoxyphenylhydrazone; LVIDd. Left ventricle internal diameter at diastole; LVISd. Left ventricle internal diameter at systole; LVEF. Left ventricle ejection fraction; LVFS. Left ventricle fractional shortening; HR. Heart rate.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: Knockdown, In Vivo, Infection, Staining, Activity Assay, Electron Microscopy, Ubiquitin Proteomics, Negative Control, Virus

USP18 inhibits mitophagy degradation and facilitates cardiac I/R injury through deubiquitinating and upregulating PTEN-L. a The protein levels of PTEN-L and PTEN in USP18-cKO mouse hearts 24 h after I/R injury ( n= 4). ⁎⁎⁎⁎ P <0.0001, ns non-significant. b The protein levels of PTEN-L and PTEN in AAV9-USP18-infected mouse hearts 24 h after I/R injury ( n= 4). ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001, ns non-significant. c Co-IP of USP18 and PTEN-L in NRVMs (left); NRVMs were transfected with HA-PTEN-L and Flag-USP18 (middle); Co-IP of Flag-USP18 and HA-PTEN-L in NRVMs (right). d Endogenous Co-IP of USP18 and PTEN-L in NRVMs subjected to H/R injury. e Endogenous Co-IP of USP18 and PTEN-L in hearts subjected to I/R injury. f PTEN-L ubiquitination (Ub) levels assessed by CO-IP in NRVMs subjected to H/R injury (top) and hearts subjected to I/R injury (bottom). g NRVMs were transfected with Ad-USP18 or USP18 siRNA or HA-PTEN-L and Myc-Ub and treated with MG132. Co-IP of Myc-Ub and HA-PTEN-L. h Schematic representations of t h e domains of PTEN-L involved in binding to USP18. Full-length PTEN-L or truncated PTEN-L was coexpressed with USP18 in HEK293T cells. Cells were subjected to immunoprecipitation with an anti-Myc antibody or an anti-HA antibody, followed by immunoblotting with the indicated antibodies. i Schematic representations of USP18 residues involved in binding to PTEN-L. Full-length USP18 or USP18 truncations were coexpressed with PTEN-L in HEK293T cells. Cells were subjected to immunoprecipitation with an anti-Myc antibody or an anti-HA antibody, followed by immunoblotting with the indicated antibodies. j Ub assay of PTEN-L in HEK293T cells cotransfected with Myc-USP18, Myc-USP18-mut, and Flag-PTEN-L and treated with 10 μmol/L MG132. k, l NRVMs were transfected with scRNA or USP18 siRNA ( k ), infected with Ad-NC or Ad-USP18 ( l ), and then treated with cycloheximide (CHX, 10 μmol/L) for the indicated time periods. Representative immunoblot analysis of PTEN-L protein levels in each group. ⁎⁎⁎⁎ P <0.0001 vs . scRNA or Ad-NC. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; H/R. Hypoxia-reoxygenation; PTEN. Phosphatase and tensin homolog; PTEN-L. Phosphatase and tensin homolog-long; AAV9. Adeno-associated virus serotype 9; NC. Negative control.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: USP18 inhibits mitophagy degradation and facilitates cardiac I/R injury through deubiquitinating and upregulating PTEN-L. a The protein levels of PTEN-L and PTEN in USP18-cKO mouse hearts 24 h after I/R injury ( n= 4). ⁎⁎⁎⁎ P <0.0001, ns non-significant. b The protein levels of PTEN-L and PTEN in AAV9-USP18-infected mouse hearts 24 h after I/R injury ( n= 4). ⁎⁎⁎ P <0.001, ⁎⁎⁎⁎ P <0.0001, ns non-significant. c Co-IP of USP18 and PTEN-L in NRVMs (left); NRVMs were transfected with HA-PTEN-L and Flag-USP18 (middle); Co-IP of Flag-USP18 and HA-PTEN-L in NRVMs (right). d Endogenous Co-IP of USP18 and PTEN-L in NRVMs subjected to H/R injury. e Endogenous Co-IP of USP18 and PTEN-L in hearts subjected to I/R injury. f PTEN-L ubiquitination (Ub) levels assessed by CO-IP in NRVMs subjected to H/R injury (top) and hearts subjected to I/R injury (bottom). g NRVMs were transfected with Ad-USP18 or USP18 siRNA or HA-PTEN-L and Myc-Ub and treated with MG132. Co-IP of Myc-Ub and HA-PTEN-L. h Schematic representations of t h e domains of PTEN-L involved in binding to USP18. Full-length PTEN-L or truncated PTEN-L was coexpressed with USP18 in HEK293T cells. Cells were subjected to immunoprecipitation with an anti-Myc antibody or an anti-HA antibody, followed by immunoblotting with the indicated antibodies. i Schematic representations of USP18 residues involved in binding to PTEN-L. Full-length USP18 or USP18 truncations were coexpressed with PTEN-L in HEK293T cells. Cells were subjected to immunoprecipitation with an anti-Myc antibody or an anti-HA antibody, followed by immunoblotting with the indicated antibodies. j Ub assay of PTEN-L in HEK293T cells cotransfected with Myc-USP18, Myc-USP18-mut, and Flag-PTEN-L and treated with 10 μmol/L MG132. k, l NRVMs were transfected with scRNA or USP18 siRNA ( k ), infected with Ad-NC or Ad-USP18 ( l ), and then treated with cycloheximide (CHX, 10 μmol/L) for the indicated time periods. Representative immunoblot analysis of PTEN-L protein levels in each group. ⁎⁎⁎⁎ P <0.0001 vs . scRNA or Ad-NC. USP18. Ubiquitin-specific protease 18; I/R. Ischemia/reperfusion; H/R. Hypoxia-reoxygenation; PTEN. Phosphatase and tensin homolog; PTEN-L. Phosphatase and tensin homolog-long; AAV9. Adeno-associated virus serotype 9; NC. Negative control.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: Infection, Co-Immunoprecipitation Assay, Transfection, Ubiquitin Proteomics, Binding Assay, Immunoprecipitation, Western Blot, Virus, Negative Control

Summary of the key findings in this paper. Cardiac I/R injury upregulates USP18 in both mouse and human hearts. USP18 interacts with PTEN-L, inhibiting Parkin phosphorylation and mitochondrial translocation, thereby suppressing mitophagy and exacerbating mitochondrial dysfunction and myocardial injury. PTEN-L additionally promotes cardiac damage via a paracrine mechanism. Genetic or pharmacological targeting of the USP18-PTEN-L axis restores mitophagy and protects against I/R-induced cardiac injury, representing a potential therapeutic strategy. I/R. Ischemia/reperfusion; PTEN-L. Phosphatase and tensin homolog-long; USP18. Ubiquitin-specific protease 18; Ub. Ubiquitination.

Journal: Military Medical Research

Article Title: USP18 exacerbates myocardial I/R injury by inhibiting Parkin mitophagy through the deubiquitinase PTEN-L

doi: 10.1016/j.mmr.2026.100004

Figure Lengend Snippet: Summary of the key findings in this paper. Cardiac I/R injury upregulates USP18 in both mouse and human hearts. USP18 interacts with PTEN-L, inhibiting Parkin phosphorylation and mitochondrial translocation, thereby suppressing mitophagy and exacerbating mitochondrial dysfunction and myocardial injury. PTEN-L additionally promotes cardiac damage via a paracrine mechanism. Genetic or pharmacological targeting of the USP18-PTEN-L axis restores mitophagy and protects against I/R-induced cardiac injury, representing a potential therapeutic strategy. I/R. Ischemia/reperfusion; PTEN-L. Phosphatase and tensin homolog-long; USP18. Ubiquitin-specific protease 18; Ub. Ubiquitination.

Article Snippet: To establish a cardiac-specific USP18 knockout mice model (USP18-cKO), USP18 flox/flox mice (C57BL/6 J; Shanghai Model Organisms, NM-cKO-215042) were bred with α-MHC-MerCreMer mice (C57BL/6 J; Jackson Laboratory, stock No. 024992).

Techniques: Phospho-proteomics, Translocation Assay, Ubiquitin Proteomics